NGB
VCF track
VCF track can show variations in two possible ways:
- If at a specific zoom level the variations are located at the same pixel, they are shown as bubbles. The number on a bubble depicts the number of variations grouped under it.
- If a variation doesn’t have any close neighbors, it is shown as such at any zoom level.
The label above each variation indicates its type. For SNVs and short indels, alt and ref letters or sequences are shown.
You can see the details of a variation as follows:
- When you hover over a variation, a tooltip with the basic information appears.
- When you click on a variation, menu with the following options appears:
Show Info - click here to display a pop-up with detailed information and a visualization of the variation’s results (refer to Working with Annotations for the details).
Show pair in split screen - click here to show the second breakpoint in split view. This option is only available if you clicked on a structural variation and its second breakpoint is not on the screen (e.g. long inversions or BNDs on other chromosome).
